Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs75013147 | chr3:56566915 | C/T | 4.25E-6 | 483 | 16.8 | 12.7 | 8.47 | KM Plot |
| THCA | rs75044911 | chr11:8601045 | T/C | 4.69E-5 | 489 | 15.9 | 17.85 | 20.07 | KM Plot |
| THCA | rs75045960 | chr10:11813220 | G/A | 4.13E-5 | 484 | 15.97 | 14.8 | 12.7 | KM Plot |
| THCA | rs75059851 | chr11:133822569 | A/G | 7.95E-5 | 468 | 16.13 | 15.33 | 20.73 | KM Plot |
| THCA | rs75061529 | chr14:59846735 | C/A | 0.000182 | 485 | 16.2 | 15 | 5.45 | KM Plot |
| THCA | rs75071604 | chr2:48048284 | C/G | 1.21E-7 | 486 | 15.32 | 18.9 | 8.27 | KM Plot |
| THCA | rs7507847 | chr19:15853717 | C/A | 7.02E-5 | 490 | 16.33 | 14.93 | 15.62 | KM Plot |
| THCA | rs75083200 | chr1:41550202 | T/G | 3.61E-12 | 489 | 17.7 | 17.73 | 14.93 | KM Plot |
| THCA | rs75092348 | chr7:29822233 | T/C | 4.14E-5 | 489 | 16.02 | 15.17 | 12.83 | KM Plot |
| THCA | rs75095805 | chr11:26648993 | T/A | 0.000312 | 487 | 15.77 | 16.62 | 9 | KM Plot |
| THCA | rs7511795 | chr1:89842459 | C/T | 0.000154 | 490 | 16.22 | 14.9 | 15.8 | KM Plot |
| THCA | rs7513391 | chr1:119120560 | C/G | 3.68E-5 | 487 | 16.23 | 15.62 | 14.57 | KM Plot |
| THCA | rs7513687 | chr1:91783141 | A/G | 7.89E-6 | 489 | 15.63 | 17.03 | 17.77 | KM Plot |
| THCA | rs75149362 | chr2:48103221 | A/G | 4.9E-8 | 490 | 15.2 | 18.9 | 8.27 | KM Plot |
| THCA | rs7516006 | chr1:45981258 | A/G | 4.19E-5 | 488 | 10.4 | 16.18 | 16.97 | KM Plot |